Publications
To view all of Dr. Perou’s publications visit: PubMed
| AUTHOR | TITLE | JOURNAL | DOWNLOAD |
| Cynthia X. Ma, Et al. | Endocrine-Sensitive Disease Rate in Postmenopausal Patients With Estrogen Receptor–Rich/ERBB2-Negative Breast Cancer Receiving Neoadjuvant Anastrozole, Fulvestrant, or Their Combination A Phase 3 Randomized Clinical Trial |
The Journal of the American Medical Association Oncology | |
| Tatjana Geukens, Et al. | Research autopsy programmes in oncology: shared experience from 14 centres across the world |
The Journal of Pathology | |
| Alina M. Hamilton, Et al. | BIRC5 expression by race, age and clinical factors in breast cancer patients | The Carolina Breast Cancer Study |
| Aranzazu Fernandez-Martinez | Tumor Intrinsic Subtypes and Gene Expression Signatures in Early-Stage ERBB2/HER2-Positive Breast Cancer A Pooled Analysis of CALGB 40601, NeoALTTO, and NSABP B-41 Trials |
The Journal of the American Medical Association Oncology | |
| Tomás Pascual, Et al. | Cell-cycle inhibition and immune microenvironment in breast cancer treated with ribociclib and letrozole or chemotherapy | Breast Cancer Research Foundation | |
| Natàlia Lorman‑Carbó, Et al. | Comparative biological activity of palbociclib and ribociclib in hormone receptor‑positive breast cancer | Scientific Reports |
| M. Marín-Aguilera, Et al. | Analytical validation of HER2DX genomic test for early-stage HER2 positive breast cancer |
Science for Optimal Cancer Care | |
| Antonio Llombart-Cussac, Et al. | HER2DX Genomic Assay in HER2-positive 1 Early Breast Cancer Treated with Trastuzumab and Pertuzumab: A Correlative Analysis from PHERGain Phase II Trial | American Association for Cancer Research | |
| G. Villacampa, Et al. | Prognostic value of HER2DX in early-stage HER2-positive breast cancer: a comprehensive analysis of 757 patients in the Sweden Cancerome Analysis NetworkdBreast dataset (SCAN-B) |
Science for Optimal Cancer Care |
| Benedetta Conte, Et al. | A 14-gene B-cell immune signature in early-stage triple-negative breast cancer (TNBC): a pooled analysis of seven studies | The Lancet | |
| Xiaopeng Sun, Et al. | Associations of immune checkpoint predictive biomarkers MHC-I and MHC-II with clinical and molecular features in a diverse breast cancer cohort | American Association for Cancer Research | |
| Natasha Vinod, Et al. | Combination of polymeric micelle formulation of TGFβ receptor inhibitors and paclitaxel produces consistent response across different mouse models of Triple-negative breast cancer | Bioengineering and Translational Medicine | |
| Min-Guk Cho, Et al. | MRE11 liberates cGAS from nucleosome sequestration during tumorigenesis | Nature | |
| Yi-Zhou Jiang, Et al. | Integrated multiomic profiling of breast cancer in the Chinese population reveals patient stratification and therapeutic vulnerabilities | Nature Cancer |
| Sara M Tolaney, Et al. | OptimICE-RD: sacituzumab govitecan + pembrolizumab vs pembrolizumab ( ±capecitabine) for residual triple-negative breast cancer | Future Oncology | |
| Yoo Jane Han, Et al. | The VEGF-Hypoxia Signature Is Upregulated in Basal-like Breast Tumors from Women of African Ancestry and Associated with Poor Outcomes in Breast Cancer | The Journal of American Association for Cancer Research | |
| Yao Li, Et al. | Visual Intratumor Heterogeneity and Breast Tumor Progression | Cancers |
| AUTHOR | TITLE | JOURNAL | DOWNLOAD |
| Frederick M. Howard, Et al. | Integration of clinical features and deep learning on pathology for the prediction of breast cancer recurrence assays and risk of recurrence | npj Breast Cancer | |
| Brandon A. Price, Et al. | Translating transcriptomic findings from cancer model systems to humans through joint dimension reduction | Communications Biology | |
| Susana Garcia-Recio, Et al. | Multiomics in primary and metastatic breast tumors from the AURORA US network finds microenvironment and epigenetic drivers of metastasis |
Nature Cancer | |
| Chaemin Lim, Et al. | High-dose paclitaxel and its combination with CSF1R inhibitor in polymeric micelles for chemoimmunotherapy of triple negative breast cancer |
Nano Today | |
| Aleix Prat, Et al. | Circulating tumor DNA reveals complex biological features with clinical relevance in metastatic breast cancer | Nature Communications | |
| Na Zhao, Et al. | Targeting eIF4A triggers an interferon response to synergize with chemotherapy and suppress triple-negative breast cancer | The Journal of Clinical Investigation | |
| Stefanie H. Mueller, Et al. | Aggregation tests identify new gene associations with breast cancer in populations with diverse ancestry | Genome Medicine | |
| Alexander Swarbrick, Et al. | Gene-Expression Profiling to Decipher Breast Cancer Inter- and Intratumor Heterogeneity | Cold Spring Harbor Perspectives in Medicine | |
| Sara M Tolaney, Et al. | Adjuvant paclitaxel and trastuzumab for node-negative, HER2-positive breast cancer: final 10-year analysis of the open-label, single-arm, phase 2 APT trial |
The Lancet Oncology | |
| G. Villacampa, Et al. | Association of HER2DX with pathological complete response and survival outcomes in HER2-positive breast cancer | Annals of Oncology | |
| Adrienne G. Walks, Et al. | Assessment of the HER2DX Assay in Patients With ERBB2-Positive Breast Cancer Treated With Neoadjuvant Paclitaxel, Trastuzumab, and Pertuzumab |
The Journal of American Medical Association Oncology | |
| Coralia Bueno-Muno, Et al. | Assessment of a Genomic Assay in Patients With ERBB2-Positive Breast Cancer Following Neoadjuvant Trastuzumab-Based Chemotherapy With or Without Pertuzumab |
The Journal of American Medical Association Oncology | |
| Aranzazu Fernandez-Martinez, Et al. | Prognostic and Predictive Value of Immune-Related Gene Expression Signatures vs Tumor-Infiltrating Lymphocytes in Early-Stage ERBB2/HER2-Positive Breast Cancer A Correlative Analysis of the CALGB 40601 and PAMELA Trials |
The Journal of American Medical Association Oncology | |
| Zhe Jiang, Et al. | Distinct shared and compartment-enriched oncogenic networks drive primary versus metastatic breast cancer | Nature Communications | |
| F. Schettini, Et al. | Prognostic value of intrinsic subtypes in hormone-receptor-positive metastatic breast cancer: systematic review and meta-analysis | European Society for Medical Oncology | |
| Mattia Rediti, Et al. | Immunological and clinicopathological features predict HER2-positive breast cancer prognosis in the neoadjuvant NeoALTTO and CALGB 40601 randomized trials |
Nature Communications | |
| Siqi Xiang, Et al. | Pairwise Nonlinear Dependence Analysis of Genomic Data | The Annals of Applied Statistics | |
| Paola Zagami, Et al. | Association of PIK3CA Mutation With Pathologic Complete Response and Outcome by Hormone Receptor Status and Intrinsic Subtype in Early-Stage ERBB2/HER2-Positive Breast Cancer |
The Journal of American Medical Association Oncology | |
| Hyunsoo Kim, Et al. | Tamoxifen Response at Single-Cell Resolution in Estrogen Receptor–Positive Primary Human Breast Tumors | Clinical Cancer Research | Translational Cancer Mechanisms and Therapy | |
| Holly Tovey, Et al. | Integrated Multimodal Analyses of DNA Damage Response and Immune Markers as Predictors of Response in Metastatic Triple-Negative Breast Cancer in the TNT Trial (NCT00532727) |
Clinical Cancer Research | Precision Medicine and Imaging | |
| Marni B. McClure, Et al. | Landscape of Genetic Alterations Underlying Hallmark Signature Changes in Cancer Reveals TP53 Aneuploidy–driven Metabolic Reprogramming |
Cancer Research Communications |
| AUTHOR | TITLE | JOURNAL | DOWNLOAD |
| Aleix Prat, Et al. | Development and validation of the new HER2DX assay for predicting pathological response and survival outcome in early-stage HER2-positive breast cancer | The Lancet | |
| Joe Dennis, Et al. | Rare germline copy number variants (CNVs) and breast cancer risk | Communications Biology | |
| Jonathan H. Shepherd, Et al. | CALGB 40603 (Alliance): Long-Term Outcomes and Genomic Correlates of Response and Survival After Neoadjuvant Chemotherapy With or Without Carboplatin and Bevacizumab in Triple-Negative Breast Cancer |
Journal of Clinical Oncology | |
| Siegel, R.L., Et al. | Multiomics in primary and metastatic breast tumors from the AURORA US network finds microenvironment and epigenetic drivers of metastasis | Nature | |
| Andrea Walens, Et. al. | RNA-Based Classification of Homologous Recombination Deficiency in Racially Diverse Patients with Breast Cancer | American Association for Cancer Research | |
| Alina M. Hamilton, Et al. | The landscape of immune microenvironments in racially-diverse breast cancer patients | American Association for Cancer Research | |
| Amber N. Hurson, Et al. | Prognostic significance of RNA-based TP53 pathway function among estrogen receptor positive and negative breast cancer cases | Nature | |
| Sarah Asad, Et al. | Challenges and Gaps in Clinical Trial Genomic Data Management | American Society of Clinical Oncology | |
| Aatish Thennavan, Et al. | Molecular signatures of in situ to invasive progression for basal-like breast cancers: An integrated mouse model and human DCIS study | Nature | |
| Youli Xia, Et al. | Integrated DNA and RNA Sequencing Reveals Drivers of Endocrine Resistance in Estrogen Receptor–Positive Breast Cancer | American Association for Cancer Research | |
| Xiaoliang Wang, Et al. | Genome‑wide interaction analysis of menopausal hormone therapy use and breast cancer risk among 62,370 women | Nature | |
| Aleix Prat, Et al. | Development andvalidationofthenewHER2DXassay for predicting pathological response and survival outcome in early-stageHER2-positive breast cancer | The Lancet Oncology | |
| Fara Braso-Maristany, Et al. | HER2DX ERBB2 mRNA expression in advanced HER2-positive breast cancer treated with T-DM1 | Journal of the National Cancer Institute | |
| Valentina Guarneri, Et al. | HER2DX genomic test in HER2-positive/hormone receptor-positive breast cancer treated with neoadjuvant trastuzumab and pertuzumab: A correlative analysis from the PerELISA trial | Ebiomedicine | |
| Carey K Anders, Et al. | Evaluating the efficacy of a priming dose of cyclophosphamide prior to pembrolizumab to treat metastatic triple negative breast cancer | Journal for Immunotherapy of Cancer | |
| Swarnima Singh, Et al. | Chemotherapy Coupled to Macrophage Inhibition Induces T-cell and B-cell Infiltration and Durable Regression in Triple-Negative Breast Cancer | Cancer Research | |
| Danielle M. File, Et al. | Clinical subtype, treatment response, and survival in De Novo and recurrent metastatic breast cancer | Breast Cancer Research and Treatment | |
| Sonam Bhatia, Et al. | Patient-derived triple negative breast cancer organoids provide robust model systems that recapitulate tumor intrinsic characteristics | Cancer Research | |
| Jung, A. Y., Et al. | Distinct reproductive risk profiles for intrinsic-like breast cancer subtypes: pooled analysis of population-based studies | Journal of the National Cancer Institute |
| AUTHOR | TITLE | JOURNAL | DOWNLOAD |
| Tomas Pascual, Et al. | Independent Validation of the PAM50-Based Chemo-Endocrine Score (CES) in Hormone Receptor-Positive HER2-Positive Breast Cancer Treated with Neoadjuvant Anti–HER2-Based Therapy | American Association for Cancer Research | |
| Lindsay M. Morton, Et al. | Radiation-related genomic profile of papillary thyroid carcinoma after the Chernobyl accident | Science | |
| Tom Walsh, Et al. | Inherited predisposition to breast cancer in the Carolina Breast Cancer Study | Nature | |
| Amber N. Hurson, Et al. | TP53 pathway function, estrogen receptor status, and breast cancer risk factors in the Carolina Breast Cancer Study | American Association for Cancer Research | |
| Iain Carmichael, Et al. | Joint and Individual Analysis of Breast Cancer Histologic Images and Genomic Covariates | The Annuals of Applied Statistics | |
| Feng Bai, Et al. | PDGFRβ is an essential therapeutic target for BRCA1-deficient mammary tumors | Breast Cancer Research | |
| Nuria Chic, Et al. | Oestrogen receptor activity in hormone-dependent breast cancer during chemotherapy | Elsevier | |
| Binita Chakraborty, Et al. | Inhibition of estrogen signaling in myeloid cells increases tumor immunity in melanoma | The Journal of Clinical Investigation | |
| Patrick D Radler, Et al. | Highly metastatic claudin-low mammary cancers can originate from luminal epithelial cells | Nature Communications | |
| Andrew S. Truong, Et al. | Entinostat induces antitumor immune responses through immune editing of tumor neoantigens | The Journal of Clinical Investigation | |
| Matthew J. Regner, Et al. | A multi-omic single-cell landscape of human gynecologic malignancies | Molecular Cell | |
| Aatish Thennavan, Et al. | Molecular analysis of TCGA breast cancer histologic types | Cell Genomics | |
| Yundong He, Et al. | FOXA1 overexpression suppresses interferon signaling and immune response in cancer | The Journal of Clinical Investigation | |
| Achal Patel, Et al. | Gene level germline contributions to clinical risk of recurrence scores in Black and White breast cancer patients | American Association for Cancer Research | |
| Yang Gao, Et al. | Tumor Suppressor PLK2 May Serve as a Biomarker in Triple-Negative Breast Cancer for Improved Response to PLK1 Therapeutics | American Association for Cancer Research | |
| Sunny Z. Wu, Et al. | A single-cell and spatially resolved atlas of human breast cancers | Nature Genetics | |
| Siyao Liu, Et al. | MultiK: an automated tool to determine optimal cluster numbers in single-cell RNA sequencing data | Genome Biology | |
| Sung Gwe Ahn, Et al. | Clinical and genomic assessment of PD‑L1 SP142 expression in triple‑negative breast cancer | Springer | |
| Sarah C. Vick, Et al. | Anti-PD-1 Checkpoint Therapy Can Promote the Function and Survival of Regulatory T Cells | The Journal of Immunology | |
| Jiehui Deng, Et al. | ULK1 inhibition overcomes compromised antigen presentation and restores antitumor immunity in LKB1-mutant lung cancer | Nature Cancer | |
| Nathan F. Schachter, Et al. | Single allele loss-of-function mutations select and sculpt conditional cooperative networks in breast cancer | Nature Communications | |
| Steven P. Angus, Et al. | FOXA1 and adaptive response determinants to HER2 targeted therapy in TBCRC 036 | Nature Partner Journals | |
| Chengheng Liao, Et al. | Integrated Metabolic Profiling and Transcriptional Analysis Reveals Therapeutic Modalities for Targeting Rapidly Proliferating Breast Cancers | American Association for Cancer Research |
| AUTHOR | TITLE | JOURNAL | DOWNLOAD |
| Aranzazu Fernandez-Martinez, MD, Et al. | Survival, Pathologic Response, and Genomics in CALGB 40601 (Alliance), a Neoadjuvant Phase III Trial of Paclitaxel-Trastuzumab With or Without Lapatinib in HER2-Positive Breast Cancer | American Society of Clinical Oncology | |
| Chengheng Liao, Et al. | Identification of BBOX1 as a Therapeutic Target in Triple-Negative Breast Cancer | American Association for Cancer Research | |
| Halei C. Benefield, PhD, Et al. | Outcomes of Hormone-Receptor Positive, HER2-Negative Breast Cancers by Race and Tumor Biological Features | Oxford University Press | |
| Aleix Prat, Et al. | A multivariable prognostic score to guide systemic therapy in early-stage HER2-positive breast cancer: a retrospective study with an external evaluation | The Lancet Oncology | |
| Daniel J. Luckett, Et al. | Receiver operating characteristic curves and confidence bands for support vector machines | Biometric Methodology | |
| Erika J. Crosby, Et al. | Stimulation of Oncogene-Specific Tumor-Infiltrating T Cells through Combined Vaccine and  Enable Sustained Antitumor Responses against Established HER2 Breast Cancer |
American Association for Cancer Research | |
| Multiple Authors | Combined associations of a polygenic risk score and classical risk factors with breast cancer risk | Oxford University Press | |
| Multiple Authors | Pan-cancer analysis of whole genomes | Nature | |
| E.L. Mayer, Et al. | TBCRC 030: a phase II study of preoperative cisplatin versus paclitaxel in triple-negative breast cancer: evaluating the homologous recombination deficiency (HRD) biomarker | Elsevier | |
| Jiehui Deng, Et al. | Serial single‑cell profiling analysis of metastatic TNBC during Nab‑paclitaxel and pembrolizumab treatment | Springer Nature | |
| Yongchao Dou, Et al. | Proteogenomic Characterization of Endometrial Carcinoma | Cell | |
| Kimberly H. Allison, MD, Et al. | Estrogen and Progesterone Receptor Testing in Breast Cancer: ASCO/CAP Guideline Update | Journal of Clinical Oncology | |
| Arran K. Turnbull, Et al. | Unlocking the transcriptomic potential of formalin-fixed paraffin embedded clinical tissues: comparison of gene expression profiling approaches | BMC Bioinformatics | |
| Francesco Schettini, Et al. | HER2-enriched subtype and pathological complete response in HER2-positive breast cancer: A systematic review and meta-analysis | Elsevier | |
| Shankha Satpathy, Et al. | Microscaled proteogenomic methods for precision oncology | Nature Communications | |
| Meichen Dong, Et al. | SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references | Oxford University Press | |
| Sara R. Selitsky, Et al. | Virus expression detection reveals RNAsequencing contamination in TCGA | BMC Genomics | |
| Arian Lundberg, Et al. | A pan-cancer analysis of the frequency of DNA alterations across cell cycle activity levels | Springer Nature | |
| Susana Garcia-Recio, Et al. | FGFR4 regulates tumor subtype differentiation in luminal breast cancer and metastatic disease | The Journal of Clinical Investigation | |
| Arjun Bhattacharya, Et al. | A framework for transcriptome-wide association studies in breast cancer in diverse study populations | Genome Biology |
| AUTHOR | TITLE | JOURNAL | DOWNLOAD |
| Halei C. Benefield, Et al. | Borderline estrogen receptor-positive breast cancers in black and white women | Journal of the National Cancer Institute | |
| Emma H. Allott, Et al. | Bimodal age distribution at diagnosis in breast cancer persists across molecular and genomic classifications | Breast Cancer Research and Treatment | |
| Emma H. Allott, Et al. | Assessment of interactions between 205 breast cancer susceptibility loci and 13 established risk factors in relation to breast cancer risk, in the Breast Cancer Association Consortium | Springer Nature | |
| Pooja Middha Kapoor, Et al. | Assessment of interactions between 205 breast cancer susceptibility loci and 13 established risk factors in relation to breast cancer risk, in the Breast Cancer Association Consortium | International Journal of Epidemiology | |
| Lisle E Mose, Charles M Perou, and Joel S Parker | Improved indel detection in DNA and RNA via realignment with ABRA2 | Bioinformatics | |
| Kin Yau Wong, Et al. | I-Boost: an integrative boosting approach for predicting survival time with multiple genomics platforms | Genome Biology | |
| Mohammad A. Alzubi, Et al. | Separation of breast cancer and organ microenvironment transcriptomes in metastases | Breast Cancer Research | |
| Arian Lundberg, Et al. | The long-term prognostic and predictive capacity of cyclin D1 gene amplification in 2305 breast tumours | Breast Cancer Research | |
| Lindsay A. Williams, Et al. | Differences in race, molecular and tumor characteristics among women diagnosed with invasive ductal and lobular breast carcinomas | Cancer Causes & Control | |
| Anonymous Authors | Task-Driven Deep Canonical Correlation Analysis | Under review | |
| Daniel P. Hollern, Et al. | B Cells and T Follicular Helper Cells Mediate Response to Checkpoint Inhibitors in High Mutation Burden Mouse Models of Breast Cancer | Cell | |
| Lindsay A. Williams, Katherine A. Hoadley, Et al. | Differences in race, molecular and tumor characteristics among women diagnosed with invasive ductal and lobular breast carcinomas | Springer Nature | |
| Arian Lundberg, Et al. | The long-term prognostic and predictive capacity of cyclin D1 gene amplification in 2305 breast tumours | Breast Cancer Research | |
| Youli Xia, Cheng Fan, Et al. | Genetic determinants of the molecular portraits of epithelial cancers | Nature Communications | |
| Anonymous Authors | Task-Driven Canonical Correlation Analysis | Anonymous Institution | |
| Adrienne G. Waks, Et al. | The immune microenvironment in hormone receptor-positive breast cancer before and after preoperative chemotherapy | AACR Publications | |
| Yao Jiang, Et al. | MERTK mediated novel site Akt phosphorylation alleviates SAV1 suppression | Nature Communications | |
| Adam D. Pfefferle, Et al. | The MMTV-Wnt1 murine model produces two phenotypically distinct subtypes of mammary tumors with unique therapeutic responses to an EGFR inhibitor | The Company of Biologists | |
| Mohammad A. Alzubi, Et al. | Separation of breast cancer and organ microenvironment transcriptomes in metastases | Breast Cancer Research | |
| Glada Zurlo, Et al. | Prolyl hydroxylase substrate adenylosuccinate lyase is an oncogenic driver in triple negative breast cancer | Nature Communications | |
| A.C. Picornell, Et al. | Breast cancer PAM50 signature: correlation and concordance between RNA-Seq and digital multiplexed gene expression technologies in a triple negative breast cancer series | BMC Genomics | |
| S. J. Kim, Et al. | Alterations in Wnt- and/or STAT3 signaling pathways and the immune microenvironment during metastatic progression | Springer Nature |
| AUTHOR | TITLE | JOURNAL | DOWNLOAD |
| Julija Hmeljak, Et al. | Integrative Molecular Characterization of Malignant Pleural Mesothelioma | Cancer Discovery | PubMed |
| Maki Tanioka, Et al. | Identification of Jun loss promotes resistance to histone deacetylase inhibitor entinostat through Myc signaling in luminal breast cancer | Genome Medicine | |
| Daniel P. Hollern, Et al. | A mouse model featuring tissue-specific deletion of p53 and Brca1 gives rise to mammary tumors with genomic and transcriptomic similarities to human basal-like breast cancer | Breast Cancer Research and Treatment | |
| Yeji An, Et al. | Cdh1 and Pik3ca Mutations Cooperate to Induce Immune-Related Invasive Lobular Carcinoma of the Breast | Cell Reports | PubMed |
| Xiang Shu, Et al. | Associations of obesity and circulating insulin and glucose with breast cancer risk: a Mendelian randomization analysis | International Journal of Epidemiology | |
| Heather D. Couture, et al. | Multiple Instance Learning for Heterogeneous Images: Training a CNN for Histopathology | International Conference on Medical Image Computing and Computer-Assisted Intervention | |
| Heather D. Couture, Et al. | Image analysis with deep learning to predict breast cancer grade, ER status, histologic subtype, and intrinsic subtype | Nature | |
| Jonathan T. Lei, Et al. | Functional Annotation of ESR1 Gene Fusions in Estrogen Receptor-Positive Breast Cancer | Cell Reports | |
| Rajshekhar R. Giraddi, Et al. | Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development | Cell Reports | |
| Tuan M. Nguyen, Et al. | FGFR1-activated Translation of WNT Pathway Components with Structured 5′ UTRs is Vulnerable to Inhibition of EIF4A-dependent Translation Initiation | AACR Publications | |
| Priyanka Sharma, Et al. | Pathological response and survival in triple-negative breast cancer following neoadjuvant carboplatin plus docetaxel | AACR Publications | |
| Maki Tanioka, Et al. | Integrated Analysis of RNA and DNA from the Phase III Trial CALGB 40601 Identifies Predictors of Response to Trastuzmab-Based Neoadjuvant Chemotherpy in HER2-Positive Breast Cancer | AACR Publications | |
| Jing Zhang, Et al. | VHL substrate transcription factor ZHX2 as an oncogenic driver in clear cell renal cell carcinoma | Science | |
| Neelam V. Desai, Et al. | Intrinsic molecular subtypes of breast cancers categorized as HER2-positive using an alternative chromosome 17 probe assay | Breast Cancer Research | |
| Lindsay A. Williams, Et al. | TP53 protein levels, RNA-based pathway assessment, and race among invasive breast cancer cases” | Nature | |
| Hui Shen, Et al. | Integrated Molecular Characterization of Testicular Germ Cell Tumors | Cell Reports | PubMed |
| Juan Miguel Cejalvo, Et al. | Clinical implications of the non-luminal intrinsic subtypes in hormone receptor-positive breast cancer | ELSEVIER | |
| Andrew Tutt, Et al. | Carboplatin in BRCA1/2-mutated and triple-negative breast cancer BRCAness subgroups: the TNT Trial | Nature Medicine | |
| Samantha Puvanesrajah, Et al. | PAM50 and risk of recurrence scores for interval breast cancers | Cancer Prevention Research | |
| Katherine A. Hoadley, Et al. | Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer | Cell | PubMed |
| Isabel Echavarria, Et al. | Pathological Response in a Triple-Negative Breast Cancer Cohort Treated with Neoadjuvant Carboplatin and Docetaxel According to Lehmann’s Refined Classification | Clinical Cancer Research | |
| Motoki Takaku, Et al. | GATA3 zinc finger 2 mutations reprogram the breast cancer transcriptional network | Nature Communications | |
| Alexandra Thomas, Et al. | Tumor mutational burden is a determinant of immune-mediated survival in breast cancer | OncoImmunology | PubMed |
| Marni B. Siegel, Et al. | Integrated RNA and DNA Sequencing Reveals Early Drivers of Metastatic Breast Cancer | The Journal of Clinical Investigation | |
| Wei Sun, Et al. | The association between copy number aberration, DNA methylation and gene expression in tumor samples | Nucleic Acids Research | |
| Marni B. Siegel, Et al. | Integrated RNA and DNA sequencing reveals early drivers of metastatic breast cancer |
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| Simon R. V. Knott, Et al. | Asparagine bioavailability governs metastasis in a model of breast cancer | Nature | |
| Milan Radovich, Et al. | The Integrated Genomic Landscape of Thymic Epithelial Tumors |
Cancer Cell | PubMed |
| Emma H. Allott, Et al. | Frequency of breast cancer subtypes among African American women in the AMBER consortium | Breast Cancer Research |
| AUTHOR | TITLE | JOURNAL | DOWNLOAD |
| Emma Nolan, Et al. | Combined immune checkpoint blockade as a therapeutic strategy for BRCA1-mutated breast cancerr | Science Translational Medicine | |
| Juan M. Cejalvo, Et al. | Intrinsic Subtypes and Gene Expression Profiles in Primary and Metastatic Breast Cancer | Cancer Research | |
| Dezheng Huo, Et al. | Comparison of Breast Cancer Molecular Features and Survival by African and European Ancestry in the Cancer Genome Atlas | JAMA Oncology | |
| Hawazin Faruki, Et al. | Lung Adenocarcinoma and Squamous Cell Carcinoma Gene Expression Subtypes Demonstrate Significant Differences in Tumor Immune Landscape | JTO | |
| Jon S. Zawistowski, Et al. | Enhancer Remodeling during Adaptive Bypass to MEK Inhibition is Attenuated by Pharmacologic Targeting of the P-TEFb Complex | Cancer Discovery | |
| K Roarty, Et al. | Ror2-mediated alternative Wnt signaling regulates cell fate and adhesion during mammary tumor progression | Nature | |
| Kuan-lin Huang, Et al. | Proteogenomic integration reveals therapeutic targets in breast cancer xenografts | Nature Communications | |
| Charles Bowerman, Et al. | Docetaxel-Loaded PLGA Nanoparticles Improve Efficacy in Taxane-Resistant Triple-Negative Breast Cancer | Nano Letters | |
| Paola A. Rojas, Et al. | Progesterone Receptor Isoform Ratio: A Breast Cancer Prognostic and Predictive Factor for Antiprogestin Responsiveness | JNCI | |
| Jacquelyn J. Bower, Et al. | Patterns of cell cycle checkpoint deregulation associated with intrinsic molecular subtypes of human breast cancer cells | NPJ | |
| Gaurav A. Mehta, Et al. | Amplification of SOX4 promotes PI3K/Akt signaling in human breast cancer | Breast Cancer Research Treatment | |
| Daniel Kechele, Et al. | Orphan Gpr182 suppresses ERK-mediated intestinal proliferation during regeneration and adenoma formation | Journal of Clinical Investigation | |
| Grace O. Silva, Et al. | SynthEx: a synthetic-normal-based DNA sequencing tool for copy number alteration detection and tumor heterogeneity profiling | Genome Biology | |
| The Cancer Genome Atlas Research Network | Integrated genomic and molecular characterization of cervical cancer | Genome Biology | |
| Farshad Farshidfar, Et al. | Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles | Genome Biology | |
| The Cancer Genome Atlas Research Network | Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma | Cell | |
| Lauren Fishbein, Et al. | Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma | Cancer Cell | |
| Andrew D. Cherniack, Et al. | Integrated Molecular Characterization of Uterine Carcinosarcoma | Cancer Cell |
| AUTHOR | TITLE | JOURNAL | DOWNLOAD |
| Philipp Mertins, Et al. | Proteogenomics connects somatic mutations to signalling in breast cancer |
Macmillan Publishers Limited | |
| Haikuo Zhang, Et al. | Oncogenic Deregulation of EZH2 as an Opportunity for Targeted Therapy in Lung Cancer |
American Association for Cancer Research | |
| Michael D. Iglesia, Et al. | Genomic Analysis of Immune Cell Infiltrates Across 11 Tumor Types | Oxford | |
| Zhijian He, Et al. | A high capacity polymeric micelle of paclitaxel: Implication of high dose drug therapy to safety and in vivo anti-cancer activity | Elsevier | |
| Jennifer B. Dennison, Et al. | High intra-tumoral stromal content defines Reactive breast cancer as a low-risk breast cancer subtype | American Association for Cancer Research | |
| Wei Zhao, Et al. | Identification of mRNA isoform switching in breast cancer | BMC Genomics | |
| Michele Ceccarelli, Et al. | Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma | CellPress | |
| Joshua D Campbell, Et al. | Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas | Nature Genetics | |
| Adam D. Pfefferle, Et al. | Genomic profiling of murine mammary tumors identifies potential personalized drug targets for p53-deficient mammary cancers | The Company of Biologists | |
| Minetta C. Liu, Et al. | PAM50 gene signatures and breast cancer prognosis with adjuvant anthracycline- and taxane-based chemotherapy:correlative analysis of C9741 (Alliance) | npj Breast Cancer | |
| Emma H. Allott, Et al. | Performance of Three-Biomarker Immunohistochemistry for Intrinsic Breast Cancer Subtyping in the AMBER Consortium | Cancer, Epidemiology, Biomarkers & Prevention | |
| Priyanka Sharma1, Et al. | Efficacy of neoadjuvant carboplatin plus docetaxel in triple negative breast cancer: Combined analysis of two cohorts | AACR Publications | |
| Jerry Usary, David Darr, Adam Pfefferle and Charles Perou | Overview of Genetically Engineered UNIT 14.38 Mouse Models of Distinct Breast Cancer Subtypes | Current Protocols in Pharmacology | |
| Michael Iglesia, Et al. | Genomic Analysis of Immune Cell Infiltrates Across 11 Tumor Types | JNCI | |
| Marc A. Becker, Et al. | Insulin Receptor Substrate Adaptor Proteins Mediate Prognostic Gene Expression Profiles in Breast Cancer | PLOS One | |
| George W. Sledge, Anees Chagpar and Charles Perou | Collective Wisdom: Lobular Carcinoma of the Breast | ASCO | |
| Hui Li, Et al. | MR Imaging Radiomics Signatures for Predicting the Risk of Breast Cancer Recurrence as Given by Research Versions of MammaPrint, Oncotype DX, and PAM50 Gene Assays | Breast Imaging | |
| Hui Li, Et al. | Quantitative MRI radiomics in the prediction of molecular classifications of breast cancer subtypes in the TCGA/TCIA data set | npj Breast Cancer | |
| Edith A. Perez, Et al. | Intrinsic Subtype and Therapeutic Response Among HER2-Positive Breast Tumors from the NCCTG (Alliance) N9831 Trial |
JNCI | |
| Miguel Martin, Et al. | Prognostic ability of EndoPredict compared to research-based versions of the PAM50 risk of recurrence (ROR) scores in nodepositive, estrogen receptor-positive, and HER2-negative breast cancer. A GEICAM/9906 sub-study | Breast Cancer Res. Treat. | |
| Campbell D. Lawson, Et al. | Rho GTPase Transcriptome Analysis Reveals Oncogenic Roles for Rho GTPase-activating Proteins in Basal-like Breast Cancers |
AACR | |
| Yujing J. Heng, Et al. | The molecular basis of breast cancer pathological phenotypes | Pathology | |
| Melissa A. Troester, Et al. | DNA defects, epigenetics, and gene expression in cancer-adjacent breast: a study from The Cancer Genome Atlas | npj Breast Cancer | |
| Cancer Genome Atlas Research Network | Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma | NEJM | |
| Lisle E. Mose, Et al. | Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V’DJer |
Bioinformatics Advance Access | |
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